Articles

Biosolids and Agricultural Soils: Insights on Unregulated Contaminants

How high-resolution mass spectrometry and multiclass extraction strategies reveal the fate of unregulated organic contaminants in biosolids and agricultural soils.
Updated
Written byShiama Thiageswaran
Presented byYoun Jeong Choi
Researcher analyzing soil samples related to biosolids

iStock 

Register for free to listen to this article
Listen with Speechify
0:00
3:00

Unregulated organic contaminants (UOCs) continue to enter the environment through everyday human activity, yet many remain largely invisible to routine monitoring programs. At the PFAS and Emerging Environmental Contaminants Symposium hosted by Separation Science, Youn Jeong Choi, Senior Analytical Chemist in the Department of Agronomy at Purdue University, examines how these compounds move through wastewater, biosolids, and agricultural soils—and what it takes analytically to measure them with confidence.

Choi frames her presentation around a central challenge: the number of synthetic chemicals in use far exceeds the scope of current regulatory frameworks. While some compounds remain unregulated because they pose low risk, others persist simply because analytical tools and monitoring strategies have not yet been developed to detect them. “Detection of unregulated organic contaminants in wastewater, biosolids, and agricultural soils is increasing,” she advises. “We need to understand their fate and behavior to properly assess environmental and human health risk.”

Why Unregulated Organic Contaminants Demand Attention

Choi explains that many UOCs originate in wastewater treatment systems, where they partition between liquid effluent and biosolids during processing. Biosolids, valued for their nitrogen and phosphorus content, are often applied to agricultural land as fertilizer. This practice creates a direct pathway for contaminants to move from human activity into soils, groundwater, and nearby surface waters. “Once these compounds enter environmental systems, they can accumulate in soil, impact biota, and move through multiple matrices,” she notes.

Working in analytical science?

Register for a FREE Separation Science account to subscribe to the Separation Science Newsletter.

Subscribe for free

Among the most concerning UOCs are endocrine-disrupting chemicals, which interfere with hormone systems in humans and wildlife. Choi highlights compounds such as bisphenols, hormones, and plasticizers, noting that research increasingly links them to developmental, reproductive, and transgenerational effects. “These compounds don’t just affect organisms that are directly exposed,” she adds. “They can impact future generations.”

From Biosolids to Soil: Following Contaminant Pathways

Choi emphasizes that understanding contaminant fate requires consideration of factors beyond water alone. According to Environmental Protection Agency (EPA) data, nearly 60% of biosolids generated in the United States are beneficially applied to land. “That high percentage means we need to understand what’s in these materials before application,” she reasons. “If biosolids contain organic contaminants, we may be introducing them directly into agricultural systems.”

Tracking these pathways raises analytical questions that traditional, single-class methods struggle to answer. The diversity of chemical structures, polarities, and behaviors among UOCs complicates extraction, separation, and detection—particularly in lipid- and protein-rich biosolid matrices.

Selecting Targets in a Sea of Chemicals

With millions of registered chemicals in commerce, Choi stresses the need for systematic prioritization. Her team compiles a comprehensive database from multiple sources, including in-house monitoring data, national sludge surveys, and suspect screening lists. From there, they filter candidates based on detection frequency, ecotoxicity, and the availability of analytical standards.

“We needed a strategy that balances environmental relevance with analytical feasibility,” Choi explains. This process yields a targeted list of more than 100 unregulated compounds across eight chemical families, including pharmaceuticals, personal care products, hormones, flame retardants, artificial sweeteners, opioids, and cannabinoids.

Addressing Multiclass and Isomeric Challenges

Analyzing such chemically diverse targets introduces further complexity. Choi points to isomeric compounds—chemicals with identical molecular formulas but different structures—as a major obstacle. “These compounds can share the same exact mass but behave very differently biologically and environmentally.”

To resolve these challenges, the workflow combines high-resolution mass spectrometry with carefully optimized chromatography. Retention time, fragmentation patterns, and column selection all play critical roles in differentiating closely related compounds. Choi also highlights the use of delay columns to separate background contamination originating from the LC system, thereby improving confidence at low concentrations.

Continue reading below…
Application Notesmerck-pfas-appnote-hero
LC-MS/MS Analysis of 40 Per- and Polyfluoroalkyl Substances in Solvents: A Modified EPA Method 1633A Approach
A modified EPA Method 1633A was used to analyze PFAS in solvents, showing that solvent purity is critical for accurate results and avoiding false positives.
Read More

Comparing Extraction Strategies for Complex Matrices

Choi compares two extraction approaches designed to improve on existing EPA methods. One employs a multi-step solid–liquid extraction (SLE) and solid-phase extraction (SPE) cleanup strategy to expand compound coverage, whereas the other uses a streamlined QuEChERS-style extraction coupled with enhanced lipid removal. “We needed methods that were comprehensive and practical for routine monitoring,” notes Choi.

The comparison reveals trade-offs between robustness and speed. While the more extensive extraction shows consistent recovery across compound classes, the faster approach significantly reduces solvent use and processing time—an important consideration for laboratories handling large sample volumes.

What this Means for Environmental Monitoring

Results from biosolid and soil samples show that UOCs are not theoretical concerns. Choi reports detections across a wide range of concentrations, with pharmaceuticals and personal care products dominating both matrices. Repeated biosolid application leads to accumulation in soils, reinforcing the need for long-term monitoring strategies.

Choi’s presentation underscores a broader message: effective environmental protection requires analytical methods that extend beyond regulated lists. “We hope this work enables more comprehensive monitoring of unregulated organic contaminants,” she shares. “That will support better risk assessment and more informed land management decisions.”

The on-demand presentation explores the data, method comparisons, and analytical considerations in greater detail. For laboratories interested in expanding beyond targeted regulatory methods and addressing complex environmental matrices, the whole session offers valuable insights into developing adaptable, forward-looking monitoring workflows.

Add Separation Science as a preferred source on Google

Add Separation Science as a preferred Google source to see more of our trusted coverage

Meet the Author(s):

Speaker

  • Youn Jeong Choi

    Youn Jeong Choi

    Dr. Youn Jeong Choi is a Senior Analytical Chemist at Purdue University with specialized expertise in PFAS detection and quantification methodologies. With a Ph.D. in Environmental Organic Chemistry area, she has developed innovative analytical techniques for complex environmental matrices including biosolids, soil, and biological tissues. Her technical proficiency spans extraction protocols, chromatographic separation, and high-resolution mass spectrometry applications for PFAS and organic contaminant analysis. As PI and co-PI on projects funded by SERDP, USGS, and EPA, Dr. Choi has pioneered methods for analysing organic contaminant, PFAS precursors and their transformation products in challenging sample types. Her analytical innovations include efficient cleanup procedures, improved detection limits, and novel pre-treatment approaches for complex media. Dr. Choi's analytical methods have been instrumental in advancing understanding of fate and transport of contaminants in environmental systems.

    View Full Profile

Here are some related topics that may interest you:

Loading Next Article...
Loading Next Article...